Boltz-2 Model by MIT

Follow the steps below to download and run the NVIDIA NIM inference microservice for this model on your infrastructure of choice.

Step 1
Generate API Key

Step 2
Pull and Run the NIM

Bash

$ docker login nvcr.io
Username: $oauthtoken
Password: <PASTE_API_KEY_HERE>

Step 3
Start the Boltz2 NIM

Export the NGC_API_KEY environment variable.

Bash

export NGC_API_KEY=<your personal NGC key>

The NIM container automatically downloads any required models. To save time and bandwidth it is recommended to provide a local cache directory. This way the NIM will be able to reuse any already downloaded models. Execute the following command to setup the cache directory:

Bash

export LOCAL_NIM_CACHE=~/.cache/nim
mkdir -p $LOCAL_NIM_CACHE
chmod -R 777 $LOCAL_NIM_CACHE

Run the NIM container with the following commands.

Bash

docker run -it \
    --runtime=nvidia \
    -p 8000:8000 \
    -e NGC_API_KEY \
    -v "$LOCAL_NIM_CACHE":/opt/nim/.cache \
    --shm-size=16g \
    nvcr.io/nim/mit/boltz2:latest

This will by default run on all available GPUs. Below is an example of running the NIM specifically on single GPU:

Bash

docker run -it \
    --runtime=nvidia \
    --gpus='"device=0"' \
    -p 8000:8000 \
    -e NGC_API_KEY \
    -v "$LOCAL_NIM_CACHE":/opt/nim/.cache \
    --shm-size=16g \
    nvcr.io/nim/mit/boltz2:latest

Query the NIM

The following python script can be saved to a file named boltz2.py and can then be run using python boltz2.py. This will post a request to the locally-running NIM and print the response if it returns successfully. If the NIM fails, the response's text field will be printed.

Python

import requests
import json
from typing import Dict, Any

SEQUENCE = "MTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID"

def query_boltz2_nim(
    input_data: Dict[str, Any],
    base_url: str = "http://localhost:8000"
) -> Dict[str, Any]:
    """
    Query the Boltz2 NIM with input data.
    
    Args:
        input_data: Dictionary containing the prediction request data
        base_url: Base URL of the NIM service (default: http://localhost:8000)
    
    Returns:
        Dictionary containing the prediction response
    """
    # Construct the full URL
    url = f"{base_url}/biology/mit/boltz2/predict"
    
    # Set headers
    headers = {
        "Content-Type": "application/json"
    }
    
    try:
        # Make the POST request
        response = requests.post(url, json=input_data, headers=headers)
        
        # Check if request was successful
        response.raise_for_status()
        
        # Return the JSON response
        return response.json()
    
    except requests.exceptions.RequestException as e:
        print(f"Error querying NIM: {e}")
        if hasattr(e.response, 'text'):
            print(f"Response text: {e.response.text}")
        raise

# Example usage
if __name__ == "__main__":
    # Example input data - modify this according to your BoltzPredictionRequest structure
    example_input = {"polymers":[
        {
            "id": "A",
            "molecule_type": "protein",
            "sequence": SEQUENCE
        }
    ]}
    
    try:
        # Query the NIM
        result = query_boltz2_nim(example_input)
        
        # Print the result
        print("Prediction result:")
        print(json.dumps(result, indent=2))
        
    except Exception as e:
        print(f"Failed to get prediction: {e}")

For more details on getting started with this NIM, visit the NVIDIA NIM Docs.

Boltz-2

Step 1Generate API Key

Step 2Pull and Run the NIM

Step 3Start the Boltz2 NIM

Step 1
Generate API Key

Step 2
Pull and Run the NIM

Step 3
Start the Boltz2 NIM