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Biology

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Explore NVIDIA Blueprints

Comprehensive reference workflows that accelerate application development and deployment, featuring NVIDIA acceleration libraries, APIs, and microservices for AI agents, digital twins, and more.

nvidiaBuild A Generative Protein Binder Design Pipeline

This blueprint shows how generative AI and accelerated NIM microservices can design protein binders smarter and faster.

BioNemoBiologyProtein Generation

nvidiaBuild A Generative Virtual Screening Pipeline

This blueprint shows how generative AI and accelerated NIM microservices can design optimized small molecules smarter and faster.

BioNemoChemistryDockingNIM
NVIDIA
Downloadable

genmol

Fragment-Based Molecular Generation by Discrete Diffusion.
BioNemo
10mo
MIT
Downloadable

diffdock

Predicts the 3D structure of how a molecule interacts with a protein.
BioNemo
10mo
NVIDIA
Downloadable

molmim

MolMIM performs controlled generation, finding molecules with the right properties.
BioNemo
10mo

Generative Virtual Screening

Search a library of small molecules to identify chemical structures which are most likely to bind to a target protein.

Protein Structure Prediction

Predict three-dimensional structure of a protein or complex from its amino acid sequence.

Openfold
Downloadable

openfold3

OpenFold3 is a third-generation biomolecular foundation model that predicts the three-dimensional structures of molecular complexes (proteins, DNA, RNA, ligands)
Biology
7mo
MIT
Downloadable

Boltz-2

Predict complex structures using Boltz-2.
Biology
10mo
Meta
Free Endpoint

esmfold

Predicts the 3D structure of a protein from its amino acid sequence.
Bionemo
11mo
Colabfold
Downloadable

msa-search

Generates a multiple sequence alignment from a query sequence and a protein sequence database search.
Biology
11mo
Openfold
Downloadable

openfold2

Predicts the 3D structure of a protein from its amino acid sequence, multiple sequence alignments, and templates.
Biology
12mo
DeepMind
Downloadable

alphafold2

Predicts the 3D structure of a protein from its amino acid sequence.
Biology
1y
DeepMind
Downloadable

alphafold2-multimer

Predicts the 3D structure of a protein from its amino acid sequence.
Biology
1y
Arc
Downloadable

evo2-40b

Evo 2 is a biological foundation model that is able to integrate information over long genomic sequences while retaining sensitivity to single-nucleotide changes.
Bionemo
1y
IPD
Downloadable

rfdiffusion

A generative model of protein backbones for protein binder design.
BioNemo
1y
IPD
Downloadable

proteinmpnn

ProteinMPNN is a deep learning model for predicting amino acid sequences for protein backbones.
BioNemo
10mo
Meta
Free Endpoint

esm2-650m

Generates embeddings of proteins from their amino acid sequences.
BioNemo
1y

Protein Design

Generate a new protein structure that binds to a target protein.